Gene

class pyaragorn.Gene

A gene identified by ARAGORN.

sequence()

Retrieve the full sequence of the RNA gene.

begin

The sequence coordinate at which the gene begins.

Hint

This coordinate is 1-based, inclusive. To use it to index a Python array or string, subtract one.

Type:

int

end

The sequence coordinate at which the gene end.

Hint

This coordinate is 1-based, inclusive. To use it to index a Python array or string, subtract one.

Type:

int

energy

The approximated normalised energy of the RNA structure.

Type:

float

length

The length of the RNA gene.

Type:

int

raw_energy

The un-normalized energy value of the RNA structure.

Type:

float

strand

-1 if the gene is on the reverse strand, +1 otherwise.

Type:

int